Building 16S rRNA Phylogenetic Trees Using PHYLIP

A. Choose a method for generating phylogenetic tree using PHYLIP

Distance   [ matrices: Neighbor-Joining FITCH KITSCH ]
Bootstrapping
No Yes
Parsimony
 Replicates
100 1000
B. Enter your email address to access your tree
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C. Select your organisms (please select < 200 organisms!)

Available Organisms
[ A B C D E F G H I J K L M N O P Q R S T U V W X Y Z ]

(T) -- indicates that the species is the TYPE strain.
Abiotrophia defectivaAbiotrophia para-adiacensAbiotrophia paradjacens
Acariicomes phytoseiuliAcaryochloris marinaAcetanaerobacterium elongatum
Acetitomaculum ruminis (T)Acetivibrio cellulolyticus (T)Acetobacter aceti (T)
Acetobacter cerevisiae (T)Acetobacter cibinongensis (T)Acetobacter estunensis
Acetobacter indonesiensis (T)Acetobacter lovaniensisAcetobacter malorum (T)
Acetobacter nitrogenifigensAcetobacter oeniAcetobacter orientalis
Acetobacter orleanensis (T)Acetobacter pasteurianusAcetobacter peroxydans
Acetobacter pomorum (T)Acetobacter syzygiiAcetobacter tropicalis (T)
Acetobacterium bakii (T)Acetobacterium carbinolicum (T)Acetobacterium fimetarium (T)
Acetobacterium halotoleransAcetobacterium malicum (T)Acetobacterium paludosum (T)
Acetobacterium psammolithicumAcetobacterium submarinusAcetobacterium tundrae (T)
Acetobacterium wieringae (T)Acetobacterium woodii (T)Acetohalobium arabaticum (T)
Acetonema longumAcholeplasma axanthumAcholeplasma brassicae
Acholeplasma cavigenitaliumAcholeplasma equifetaleAcholeplasma granularum
Acholeplasma hippikonAcholeplasma laidlawii (T)Acholeplasma modicum (T)
Acholeplasma morumAcholeplasma multilocaleAcholeplasma oculi (T)
Acholeplasma palmae (T)Acholeplasma parvumAcholeplasma pleciae (T)
Acholeplasma vituli (T)Achromatium minusAchromatium oxaliferum
Achromobacter cycloclastesAchromobacter denitrificansAchromobacter insolitus (T)
Achromobacter piechaudii (T)Achromobacter ruhlandiiAchromobacter spanius (T)
Achromobacter xylosoxidansAcidaminobacter hydrogenoformans (T)Acidaminococcus fermentans (T)
Acidicaldus organivoransAcidimicrobium ferrooxidans (T)Acidiphilium acidophilum (T)
Acidiphilium angustum (T)Acidiphilium cryptumAcidiphilium multivorum (T)
Acidiphilium organovorum (T)Acidiphilium rubrum (T)Acidiphilium symbioticum
Acidisphaera rubrifaciens (T)Acidithiobacillus albertensis (T)Acidithiobacillus caldus
Acidithiobacillus ferrooxidansAcidithiobacillus thiooxidansAcidocella aminolytica (T)
Acidocella facilis (T)Acidomonas methanolica (T)Acidothermus cellulolyticus
Acidovorax aerodenitrificansAcidovorax anthurii (T)Acidovorax avenae
Acidovorax defluvii (T)Acidovorax delafieldii (T)Acidovorax facilis (T)
Acidovorax konjaci (T)Acidovorax temperans (T)Acidovorax valerianellae (T)
Acidovorax wohlfahrtiiAcinetobacter baumanniiAcinetobacter baylyi (T)
Acinetobacter bouvetii (T)Acinetobacter brisouiAcinetobacter calcoaceticus
Acinetobacter gerneri (T)Acinetobacter grimontii (T)Acinetobacter haemolyticus
Acinetobacter johnsoniiAcinetobacter juniiAcinetobacter lwoffii
Acinetobacter marinusAcinetobacter parvus (T)Acinetobacter psychrotolerans
Acinetobacter radioresistens (T)Acinetobacter rhizosphaeraeAcinetobacter schindleri (T)
Acinetobacter seohaensisAcinetobacter tandoii (T)Acinetobacter tjernbergiae (T)
Acinetobacter towneri (T)Acinetobacter ursingiiAcinetobacter venetianus
Acrocarpospora corrugataAcrocarpospora pleiomorpha (T)Actinoalloteichus alkalophilus
Actinoalloteichus cyanogriseus (T)Actinoalloteichus spitiensisActinobacillus actinomycetemcomitans (T)
Actinobacillus arthritidisActinobacillus capsulatusActinobacillus delphinicola
Actinobacillus equuliActinobacillus hominis (T)Actinobacillus indolicus (T)
Actinobacillus lignieresiiActinobacillus minor (T)Actinobacillus muris (T)
Actinobacillus pleuropneumoniaeActinobacillus porcinus (T)Actinobacillus porcitonsillarum
Actinobacillus rossiiActinobacillus salpingitidisActinobacillus scotiae (T)
Actinobacillus seminis (T)Actinobacillus succinogenesActinobacillus suis
Actinobacillus ureae (T)Actinobaculum massiliaeActinobaculum schaalii
Actinobaculum suis (T)Actinobaculum urinale (T)Actinocorallia aurantiaca
Actinocorallia cavernaActinocorallia glomerataActinocorallia herbida (T)
Actinocorallia libanotica (T)Actinocorallia longicatenaActinokineospora auranticolor
Actinokineospora diospyrosa (T)Actinokineospora enzanensisActinokineospora globicatena (T)
Actinokineospora inagensisActinokineospora ripariaActinokineospora terrae (T)
Actinomadura albaActinomadura atramentariaActinomadura catellatispora (T)
Actinomadura chibensisActinomadura citreaActinomadura coerulea (T)
Actinomadura cremeaActinomadura echinosporaActinomadura fibrosa
Actinomadura formosensisActinomadura fulvescensActinomadura glauciflava (T)
Actinomadura hallensisActinomadura hibiscaActinomadura kijaniata (T)
Actinomadura latina (T)Actinomadura lividaActinomadura luteofluorescens (T)
Actinomadura macra (T)Actinomadura madurae (T)Actinomadura mexicana (T)
Actinomadura meyerae (T)Actinomadura namibiensis (T)Actinomadura napierensis
Actinomadura nitritigenes (T)Actinomadura oligosporaActinomadura pelletieri
Actinomadura rubrobruneaActinomadura rudentiformisActinomadura rugatobispora (T)
Actinomadura spadixActinomadura umbrina (T)Actinomadura verrucosospora (T)
Actinomadura vinacea (T)Actinomadura viridilutea (T)Actinomadura viridis (T)
Actinomadura yumaensis (T)Actinomyces bovisActinomyces bowdenii (T)
Actinomyces canis (T)Actinomyces cardiffensis (T)Actinomyces catuli (T)
Actinomyces coleocanis (T)Actinomyces dentalis (T)Actinomyces denticolens (T)
Actinomyces europaeusActinomyces funkei (T)Actinomyces georgiae (T)
Actinomyces gerencseriae (T)Actinomyces graevenitziiActinomyces hongkongensis (T)
Actinomyces hordeovulneris (T)Actinomyces howellii (T)Actinomyces hyovaginalis (T)
Actinomyces israeliiActinomyces lingnaeActinomyces marimammalium (T)
Actinomyces meyeri (T)Actinomyces naeslundiiActinomyces nasicola (T)
Actinomyces neuiiActinomyces odontolyticusActinomyces oricola (T)
Actinomyces orihominisActinomyces radicidentis (T)Actinomyces radingae (T)
Actinomyces ruminocolaActinomyces slackiiActinomyces suimastitidis (T)
Actinomyces turicensisActinomyces urogenitalisActinomyces vaccimaxillae (T)
Actinomyces viscosusActinoplanes arizonaensisActinoplanes auranticolor
Actinoplanes awajinensisActinoplanes brasiliensisActinoplanes campanulatus (T)
Actinoplanes capillaceus (T)Actinoplanes consettensis (T)Actinoplanes couchii
Actinoplanes cyaneusActinoplanes deccanensisActinoplanes derwentensis (T)
Actinoplanes digitatisActinoplanes durhamensisActinoplanes ferrugineus
Actinoplanes garbadinensisActinoplanes globisporus (T)Actinoplanes humidus (T)
Actinoplanes ianthinogenesActinoplanes italicus (T)Actinoplanes kinshanensis
Actinoplanes liguriaeActinoplanes lobatus (T)Actinoplanes missouriensis
Actinoplanes nipponensisActinoplanes palleroniiActinoplanes pallidoaurantiacus
Actinoplanes penicillatusActinoplanes philippinensisActinoplanes purpeobrunneus
Actinoplanes pyriformisActinoplanes rectilineatus (T)Actinoplanes regularis
Actinoplanes roseosporangiusActinoplanes rutilosporangiusActinoplanes sarveparensis
Actinoplanes teichomyceticusActinoplanes tuftoflagellusActinoplanes utahensis
Actinoplanes violaceusActinoplanes yunnanensisActinopolymorpha singaporensis (T)
Actinopolyspora halophila (T)Actinopolyspora indiensisActinopolyspora mortivallis
Actinopolyspora salinaActinopolyspora xinjiangensisActinostreptospora chiangmeiensis
Actinosynnema mirumActinosynnema pretiosum (T)Actinotelluria brasiliensis
Adhaeribacter aquaticusAdvenella incenataAequorivita antarctica
Aequorivita crocea (T)Aequorivita lipolytica (T)Aequorivita sublithincola (T)
Aeriscardovia aeriphilaAerobacter ureolyicaAerococcus christensenii
Aerococcus sanguinicolaAerococcus urinaeAerococcus urinaehominis (T)
Aerococcus viridans (T)Aeromicrobium alkaliterraeAeromicrobium erythreum (T)
Aeromicrobium fastidiosumAeromicrobium ginsengisoliAeromicrobium marinum (T)
Aeromicrobium panaciterraeAeromonas allosaccharophila (T)Aeromonas bestiarum (T)
Aeromonas culicicolaAeromonas encheleiaAeromonas enteropelogenes (T)
Aeromonas eucrenophilaAeromonas guangheiiAeromonas hydrophila
Aeromonas jandaeiAeromonas media (T)Aeromonas molluscorum
Aeromonas popoffii (T)Aeromonas punctataAeromonas salmonicida
Aeromonas schubertii (T)Aeromonas simiae (T)Aeromonas sobria (T)
Aeromonas veronii (T)Aerosphaera taetraAestuariibacter halophilus (T)
Aestuariibacter salexigens (T)Aestuariimicrobium kwangyangensisAfipia birgiae (T)
Afipia broomeaeAfipia felisAfipia lausannensis
Afipia massiliensisAgarivorans albusAgreia bicolorata (T)
Agreia pratensis (T)Agrobacterium agileAgrobacterium albertimagni
Agrobacterium larrymoorei (T)Agrobacterium rhizogenesAgrobacterium rubi
Agrobacterium sanguineumAgrobacterium tumefaciensAgrobacterium viscosum
Agrobacterium vitis (T)Agrococcus baldri (T)Agrococcus casei
Agrococcus citreus (T)Agrococcus jenensisAgrococcus lahaulensis
Agromonas oligotrophica (T)Agromyces albus (T)Agromyces allium
Agromyces aurantiacus (T)Agromyces bracchium (T)Agromyces cerinus (T)
Agromyces fucosus (T)Agromyces humatusAgromyces italicus
Agromyces lapidisAgromyces luteolus (T)Agromyces mediolanus
Agromyces neolithicus (T)Agromyces ramosus (T)Agromyces rhizospherae (T)
Agromyces salentinus (T)Agromyces subbeticusAgromyces succinolyticus
Agromyces ulmiAhrensia kielensisAkkermansia muciniphila
Albibacter methylovorans (T)Albidovulum inexpectatum (T)Alcaligenes defragrans
Alcaligenes faecalisAlcaligenes latus (T)Alcaligenes monasteriensis
Alcanivorax borkumensisAlcanivorax dieseloleiAlcanivorax jadensis (T)
Alcanivorax venustensis (T)Algibacter gromoviiAlgibacter lectus
Algicola bacteriolyticaAlgidimarina butyricumAlgidimarina propionica
Algoriphagus antarcticusAlgoriphagus aquimarinus (T)Algoriphagus chordae (T)
Algoriphagus locisalisAlgoriphagus ratkowskyiAlgoriphagus terrigena
Algoriphagus winogradskyi (T)Algoriphagus yeomjeoniAlicycliphilus denitrificans (T)
Alicyclobacillus acidiphilus (T)Alicyclobacillus acidocaldariusAlicyclobacillus acidoterrestris
Alicyclobacillus cycloheptanicusAlicyclobacillus disulfidooxidansAlicyclobacillus herbarius (T)
Alicyclobacillus hesperidumAlicyclobacillus pomorum (T)Alicyclobacillus sendaiensis (T)
Alicyclobacillus tengchongensisAlicyclobacillus tolerans (T)Alicyclobacillus vulcanalis (T)
Alishewanella fetalis (T)Alisphingobium solumAlistipes finegoldii (T)
Alistipes massiliensisAlistipes putredinis (T)Alkalibacillus filiformis
Alkalibacillus salilacusAlkalibacillus silvaisolusAlkalibacter saccharofermentans
Alkalibacterium iburienseAlkalibacterium olivapovliticusAlkalibacterium psychrotolerans (T)
Alkaliflexus imshenetskiiAlkalilimnicola ehrlicheiAlkalilimnicola halodurans (T)
Alkalimonas amylolyticaAlkalimonas delamerensisAlkalimonas kollagenimarina
Alkaliphils metalliredigenesAlkaliphilus crotonatoxidans (T)Alkaliphilus transvaalensis
Alkalispirillum mobile (T)Alkanindiges hongkongensisAlkanindiges illinoisensis (T)
Allisonella histaminiformans (T)Allobaculum stercoricanisAllochromatium minutissimum (T)
Allochromatium palmeriAllochromatium vinosumAllochromatium warmingii (T)
Allofustis seminis (T)Alloiococcus otitis (T)Allomonas enterica
Alterierythrobacter epoxidivoransAlterococcus agarolyticus (T)Alteromonas addita
Alteromonas alvinellaeAlteromonas hispanicaAlteromonas litorea (T)
Alteromonas macleodii (T)Alteromonas marinaAlteromonas simiduii
Alteromonas stellipolaris (T)Alteromonas tagaeAlysiella filiformis (T)
Amaricoccus kaplicensis (T)Amaricoccus macauensis (T)Amaricoccus tamworthensis (T)
Amaricoccus veronensis (T)Aminobacter aganoensis (T)Aminobacter aminovorans (T)
Aminobacter ciceroneiAminobacter lissarensisAminobacter niigataensis (T)
Aminobacterium colombiense (T)Aminobacterium mobile (T)Aminomonas aminovorus
Aminomonas paucivorans (T)Ammonifex degensii (T)Ammoniphilus oxalaticus (T)
Ammoniphilus oxalivorans (T)Amoebinatus massiliaeAmphibacillus fermentum (T)
Amphibacillus tropicus (T)Amphibacillus xylanusAmycolatopsis alba (T)
Amycolatopsis albidoflavus (T)Amycolatopsis azureaAmycolatopsis balhimycina (T)
Amycolatopsis benzoatilyticaAmycolatopsis coloradensisAmycolatopsis decaplanina (T)
Amycolatopsis fastidiosaAmycolatopsis halotoleransAmycolatopsis japonica (T)
Amycolatopsis jejuensisAmycolatopsis kentuckyensis (T)Amycolatopsis keratiniphila (T)
Amycolatopsis lactamduransAmycolatopsis lexingtonensisAmycolatopsis lurida
Amycolatopsis mediterraneiAmycolatopsis methanolicaAmycolatopsis minnesotensis
Amycolatopsis nigrescensAmycolatopsis orientalisAmycolatopsis palatopharyngis (T)
Amycolatopsis plumensisAmycolatopsis pretoriensis (T)Amycolatopsis rifamycinica (T)
Amycolatopsis rubida (T)Amycolatopsis saalfeldensisAmycolatopsis sacchari (T)
Amycolatopsis sulphureaAmycolatopsis taiwanensisAmycolatopsis thermoflava (T)
Amycolatopsis tolypomycina (T)Amycolatopsis tolypophorousAmycolatopsis umgenii
Amycolatopsis vancoresmycina (T)Anabaena affinisAnabaena augstumalis
Anabaena azoticaAnabaena bergiiAnabaena circinalis
Anabaena compactaAnabaena crassaAnabaena cylindrica (T)
Anabaena ellipsoidesAnabaena flos-aquaeAnabaena kisseleviana
Anabaena lemmermanniiAnabaena macrosporaAnabaena mendotae
Anabaena mucosaAnabaena oscillarioidesAnabaena planctonica
Anabaena planktonicaAnabaena sigmoideaAnabaena smithii
Anabaena solitariaAnabaena spiroidesAnabaena ucrainica
Anabaena variabilisAnabaena viguieriAnabaenopsis circularis
Anaeroarcus burkinensis (T)Anaerobacter polyendosporus (T)Anaerobaculum mobile (T)
Anaerobaculum thermoterrnum (T)Anaerobiospirillum succiniciproducens (T)Anaerobiospirillum thomasii (T)
Anaerobranca californiensisAnaerobranca gottschalkii (T)Anaerobranca horikoshii (T)
Anaerocellum thermophilumAnaerococcus hydrogenalis (T)Anaerococcus lactolyticus
Anaerococcus octavius (T)Anaerococcus prevotiiAnaerococcus tetradius
Anaerococcus vaginalisAnaerofilum agile (T)Anaerofilum pentosovorans (T)
Anaerofustis stercorihominis (T)Anaeroglobus geminatus (T)Anaerolinea thermophila (T)
Anaeromusa acidaminophila (T)Anaeromyxobacter dehalogenansAnaerophaga thermohalophila (T)
Anaeroplasma abactoclasticum (T)Anaeroplasma bactoclasticum (T)Anaeroplasma varium (T)
Anaerosinus glycerini (T)Anaerospora hongkongensisAnaerostipes caccae
Anaerotruncus colihominisAnaerovibrio lipolyticusAnaerovorax odorimutans (T)
Anaplasma bovis (T)Anaplasma centraleAnaplasma marginale
Anaplasma ovisAnaplasma phagocytophilumAnaplasma platys (T)
Ancylobacter aquaticus (T)Ancylobacter rudongensis (T)